cayley/graph/sql/quadstore.go
Barak Michener 3f391a782c first working-ish Postgres backend
Subcommits:

implement iterator and remove ResultTree

add Err() to sql

remove redundant and less helpful indices, change fillfactor, and use COPY FROM
2015-08-12 16:03:25 -04:00

295 lines
7.2 KiB
Go

package sql
import (
"database/sql"
"fmt"
"github.com/lib/pq"
"github.com/barakmich/glog"
"github.com/google/cayley/graph"
"github.com/google/cayley/graph/iterator"
"github.com/google/cayley/quad"
)
const QuadStoreType = "sql"
func init() {
graph.RegisterQuadStore(QuadStoreType, true, newQuadStore, createSQLTables, nil)
}
type QuadStore struct {
db *sql.DB
sqlFlavor string
size int64
lru *cache
}
func connectSQLTables(addr string, _ graph.Options) (*sql.DB, error) {
// TODO(barakmich): Parse options for more friendly addr, other SQLs.
conn, err := sql.Open("postgres", addr)
if err != nil {
glog.Errorf("Couldn't open database at %s: %#v", addr, err)
return nil, err
}
return conn, nil
}
func createSQLTables(addr string, options graph.Options) error {
conn, err := connectSQLTables(addr, options)
if err != nil {
return err
}
tx, err := conn.Begin()
if err != nil {
glog.Errorf("Couldn't begin creation transaction: %s", err)
return err
}
quadTable, err := tx.Exec(`
CREATE TABLE quads (
subject TEXT NOT NULL,
predicate TEXT NOT NULL,
object TEXT NOT NULL,
label TEXT,
horizon BIGSERIAL PRIMARY KEY,
id BIGINT,
ts timestamp,
UNIQUE(subject, predicate, object, label)
);`)
if err != nil {
glog.Errorf("Cannot create quad table: %v", quadTable)
return err
}
index, err := tx.Exec(`
CREATE INDEX pos_index ON quads (predicate, object, subject) WITH (FILLFACTOR = 50);
CREATE INDEX osp_index ON quads (object, subject, predicate) WITH (FILLFACTOR = 50);
`)
if err != nil {
glog.Errorf("Cannot create indices: %v", index)
return err
}
tx.Commit()
return nil
}
func newQuadStore(addr string, options graph.Options) (graph.QuadStore, error) {
var qs QuadStore
conn, err := connectSQLTables(addr, options)
if err != nil {
return nil, err
}
qs.db = conn
qs.sqlFlavor = "postgres"
qs.size = -1
qs.lru = newCache(1024)
return &qs, nil
}
func (qs *QuadStore) copyFrom(tx *sql.Tx, in []graph.Delta) error {
stmt, err := tx.Prepare(pq.CopyIn("quads", "subject", "predicate", "object", "label", "id", "ts"))
if err != nil {
return err
}
for _, d := range in {
_, err := stmt.Exec(d.Quad.Subject, d.Quad.Predicate, d.Quad.Object, d.Quad.Label, d.ID.Int(), d.Timestamp)
if err != nil {
glog.Errorf("couldn't prepare COPY statement: %v", err)
return err
}
}
_, err = stmt.Exec()
if err != nil {
return err
}
return stmt.Close()
}
func (qs *QuadStore) buildTxPostgres(tx *sql.Tx, in []graph.Delta) error {
allAdds := true
for _, d := range in {
if d.Action != graph.Add {
allAdds = false
}
}
if allAdds {
return qs.copyFrom(tx, in)
}
insert, err := tx.Prepare(`INSERT INTO quads(subject, predicate, object, label, id, ts) VALUES ($1, $2, $3, $4, $5, $6)`)
if err != nil {
glog.Errorf("Cannot prepare insert statement: %v", err)
return err
}
for _, d := range in {
switch d.Action {
case graph.Add:
_, err := insert.Exec(d.Quad.Subject, d.Quad.Predicate, d.Quad.Object, d.Quad.Label, d.ID.Int(), d.Timestamp)
if err != nil {
glog.Errorf("couldn't prepare INSERT statement: %v", err)
return err
}
//for _, dir := range quad.Directions {
//_, err := tx.Exec(`
//WITH upsert AS (UPDATE nodes SET size=size+1 WHERE node=$1 RETURNING *)
//INSERT INTO nodes (node, size) SELECT $1, 1 WHERE NOT EXISTS (SELECT * FROM UPSERT);
//`, d.Quad.Get(dir))
//if err != nil {
//glog.Errorf("couldn't prepare upsert statement in direction %s: %v", dir, err)
//return err
//}
//}
case graph.Delete:
_, err := tx.Exec(`DELETE FROM quads WHERE subject=$1 and predicate=$2 and object=$3 and label=$4;`,
d.Quad.Subject, d.Quad.Predicate, d.Quad.Object, d.Quad.Label)
if err != nil {
glog.Errorf("couldn't prepare DELETE statement: %v", err)
}
//for _, dir := range quad.Directions {
//tx.Exec(`UPDATE nodes SET size=size-1 WHERE node=$1;`, d.Quad.Get(dir))
//}
default:
panic("unknown action")
}
}
return nil
}
func (qs *QuadStore) ApplyDeltas(in []graph.Delta, _ graph.IgnoreOpts) error {
// TODO(barakmich): Support ignoreOpts? "ON CONFLICT IGNORE"
tx, err := qs.db.Begin()
if err != nil {
glog.Errorf("couldn't begin write transaction: %v", err)
return err
}
switch qs.sqlFlavor {
case "postgres":
err = qs.buildTxPostgres(tx, in)
if err != nil {
return err
}
default:
panic("no support for flavor: " + qs.sqlFlavor)
}
return tx.Commit()
}
func (qs *QuadStore) Quad(val graph.Value) quad.Quad {
return val.(quad.Quad)
}
func (qs *QuadStore) QuadIterator(d quad.Direction, val graph.Value) graph.Iterator {
return NewIterator(qs, d, val)
}
func (qs *QuadStore) NodesAllIterator() graph.Iterator {
return NewAllIterator(qs, "nodes")
}
func (qs *QuadStore) QuadsAllIterator() graph.Iterator {
return NewAllIterator(qs, "quads")
}
func (qs *QuadStore) ValueOf(s string) graph.Value {
return s
}
func (qs *QuadStore) NameOf(v graph.Value) string {
return v.(string)
}
func (qs *QuadStore) Size() int64 {
// TODO(barakmich): Sync size with writes.
if qs.size != -1 {
return qs.size
}
c := qs.db.QueryRow("SELECT COUNT(*) FROM quads;")
err := c.Scan(&qs.size)
if err != nil {
glog.Errorf("Couldn't execute COUNT: %v", err)
return 0
}
return qs.size
}
func (qs *QuadStore) Horizon() graph.PrimaryKey {
var horizon int64
err := qs.db.QueryRow("SELECT horizon FROM quads ORDER BY horizon DESC LIMIT 1;").Scan(&horizon)
if err != nil {
glog.Errorf("Couldn't execute horizon: %v", err)
return graph.NewSequentialKey(0)
}
return graph.NewSequentialKey(horizon)
}
func (qs *QuadStore) FixedIterator() graph.FixedIterator {
return iterator.NewFixed(iterator.Identity)
}
func (qs *QuadStore) Close() {
qs.db.Close()
}
func (qs *QuadStore) QuadDirection(in graph.Value, d quad.Direction) graph.Value {
q := in.(quad.Quad)
return q.Get(d)
}
func (qs *QuadStore) Type() string {
return QuadStoreType
}
func (qs *QuadStore) OptimizeIterator(it graph.Iterator) (graph.Iterator, bool) {
switch it.Type() {
case graph.LinksTo:
return qs.optimizeLinksTo(it.(*iterator.LinksTo))
}
return it, false
}
func (qs *QuadStore) optimizeLinksTo(it *iterator.LinksTo) (graph.Iterator, bool) {
subs := it.SubIterators()
if len(subs) != 1 {
return it, false
}
primary := subs[0]
if primary.Type() == graph.Fixed {
size, _ := primary.Size()
if size == 1 {
if !graph.Next(primary) {
panic("unexpected size during optimize")
}
val := primary.Result()
newIt := qs.QuadIterator(it.Direction(), val)
nt := newIt.Tagger()
nt.CopyFrom(it)
for _, tag := range primary.Tagger().Tags() {
nt.AddFixed(tag, val)
}
it.Close()
return newIt, true
}
}
return it, false
}
func (qs *QuadStore) sizeForIterator(isAll bool, dir quad.Direction, val string) int64 {
var err error
if isAll {
return qs.Size()
}
if val, ok := qs.lru.Get(val + string(dir.Prefix())); ok {
return val
}
var size int64
glog.V(4).Infoln("sql: getting size for select %s, %s", dir.String(), val)
err = qs.db.QueryRow(
fmt.Sprintf("SELECT count(*) FROM quads WHERE %s = $1;", dir.String()), val).Scan(&size)
if err != nil {
glog.Errorln("Error getting size from SQL database: %v", err)
return 0
}
qs.lru.Put(val+string(dir.Prefix()), size)
return size
}