// Copyright 2014 The Cayley Authors. All rights reserved. // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. package leveldb import ( "bytes" "crypto/sha1" "encoding/binary" "encoding/json" "fmt" "hash" "github.com/barakmich/glog" "github.com/syndtr/goleveldb/leveldb" "github.com/syndtr/goleveldb/leveldb/cache" "github.com/syndtr/goleveldb/leveldb/opt" "github.com/syndtr/goleveldb/leveldb/util" "github.com/google/cayley/graph" "github.com/google/cayley/graph/iterator" "github.com/google/cayley/quad" ) const ( DefaultCacheSize = 2 DefaultWriteBufferSize = 20 ) type TripleStore struct { dbOpts *opt.Options db *leveldb.DB path string open bool size int64 hasher hash.Hash writeopts *opt.WriteOptions readopts *opt.ReadOptions } func createNewLevelDB(path string, _ graph.Options) error { opts := &opt.Options{} db, err := leveldb.OpenFile(path, opts) if err != nil { glog.Errorln("Error: couldn't create database: ", err) return err } defer db.Close() qs := &TripleStore{} qs.db = db qs.writeopts = &opt.WriteOptions{ Sync: true, } qs.Close() return nil } func newTripleStore(path string, options graph.Options) (graph.TripleStore, error) { var qs TripleStore qs.path = path cache_size := DefaultCacheSize if val, ok := options.IntKey("cache_size_mb"); ok { cache_size = val } qs.dbOpts = &opt.Options{ BlockCache: cache.NewLRUCache(cache_size * opt.MiB), } qs.dbOpts.ErrorIfMissing = true write_buffer_mb := DefaultWriteBufferSize if val, ok := options.IntKey("write_buffer_mb"); ok { write_buffer_mb = val } qs.dbOpts.WriteBuffer = write_buffer_mb * opt.MiB qs.hasher = sha1.New() qs.writeopts = &opt.WriteOptions{ Sync: false, } qs.readopts = &opt.ReadOptions{} db, err := leveldb.OpenFile(qs.path, qs.dbOpts) if err != nil { panic("Error, couldn't open! " + err.Error()) } qs.db = db glog.Infoln(qs.GetStats()) qs.getSize() return &qs, nil } func (qs *TripleStore) GetStats() string { out := "" stats, err := qs.db.GetProperty("leveldb.stats") if err == nil { out += fmt.Sprintln("Stats: ", stats) } out += fmt.Sprintln("Size: ", qs.size) return out } func (qs *TripleStore) Size() int64 { return qs.size } func (qs *TripleStore) createKeyFor(d [3]quad.Direction, triple *quad.Quad) []byte { key := make([]byte, 0, 2+(qs.hasher.Size()*3)) // TODO(kortschak) Remove dependence on String() method. key = append(key, []byte{d[0].Prefix(), d[1].Prefix()}...) key = append(key, qs.convertStringToByteHash(triple.Get(d[0]))...) key = append(key, qs.convertStringToByteHash(triple.Get(d[1]))...) key = append(key, qs.convertStringToByteHash(triple.Get(d[2]))...) return key } func (qs *TripleStore) createProvKeyFor(d [3]quad.Direction, triple *quad.Quad) []byte { key := make([]byte, 0, 2+(qs.hasher.Size()*4)) // TODO(kortschak) Remove dependence on String() method. key = append(key, []byte{quad.Provenance.Prefix(), d[0].Prefix()}...) key = append(key, qs.convertStringToByteHash(triple.Get(quad.Provenance))...) key = append(key, qs.convertStringToByteHash(triple.Get(d[0]))...) key = append(key, qs.convertStringToByteHash(triple.Get(d[1]))...) key = append(key, qs.convertStringToByteHash(triple.Get(d[2]))...) return key } func (qs *TripleStore) createValueKeyFor(s string) []byte { key := make([]byte, 0, 1+qs.hasher.Size()) key = append(key, []byte("z")...) key = append(key, qs.convertStringToByteHash(s)...) return key } func (qs *TripleStore) AddTriple(t *quad.Quad) { batch := &leveldb.Batch{} qs.buildWrite(batch, t) err := qs.db.Write(batch, qs.writeopts) if err != nil { glog.Errorf("Couldn't write to DB for triple %s", t) return } qs.size++ } // Short hand for direction permutations. var ( spo = [3]quad.Direction{quad.Subject, quad.Predicate, quad.Object} osp = [3]quad.Direction{quad.Object, quad.Subject, quad.Predicate} pos = [3]quad.Direction{quad.Predicate, quad.Object, quad.Subject} pso = [3]quad.Direction{quad.Predicate, quad.Subject, quad.Object} ) func (qs *TripleStore) RemoveTriple(t *quad.Quad) { _, err := qs.db.Get(qs.createKeyFor(spo, t), qs.readopts) if err != nil && err != leveldb.ErrNotFound { glog.Errorf("Couldn't access DB to confirm deletion") return } if err == leveldb.ErrNotFound { // No such triple in the database, forget about it. return } batch := &leveldb.Batch{} batch.Delete(qs.createKeyFor(spo, t)) batch.Delete(qs.createKeyFor(osp, t)) batch.Delete(qs.createKeyFor(pos, t)) qs.UpdateValueKeyBy(t.Get(quad.Subject), -1, batch) qs.UpdateValueKeyBy(t.Get(quad.Predicate), -1, batch) qs.UpdateValueKeyBy(t.Get(quad.Object), -1, batch) if t.Get(quad.Provenance) != "" { batch.Delete(qs.createProvKeyFor(pso, t)) qs.UpdateValueKeyBy(t.Get(quad.Provenance), -1, batch) } err = qs.db.Write(batch, nil) if err != nil { glog.Errorf("Couldn't delete triple %s", t) return } qs.size-- } func (qs *TripleStore) buildTripleWrite(batch *leveldb.Batch, t *quad.Quad) { bytes, err := json.Marshal(*t) if err != nil { glog.Errorf("Couldn't write to buffer for triple %s\n %s\n", t, err) return } batch.Put(qs.createKeyFor(spo, t), bytes) batch.Put(qs.createKeyFor(osp, t), bytes) batch.Put(qs.createKeyFor(pos, t), bytes) if t.Get(quad.Provenance) != "" { batch.Put(qs.createProvKeyFor(pso, t), bytes) } } func (qs *TripleStore) buildWrite(batch *leveldb.Batch, t *quad.Quad) { qs.buildTripleWrite(batch, t) qs.UpdateValueKeyBy(t.Get(quad.Subject), 1, nil) qs.UpdateValueKeyBy(t.Get(quad.Predicate), 1, nil) qs.UpdateValueKeyBy(t.Get(quad.Object), 1, nil) if t.Get(quad.Provenance) != "" { qs.UpdateValueKeyBy(t.Get(quad.Provenance), 1, nil) } } type ValueData struct { Name string Size int64 } func (qs *TripleStore) UpdateValueKeyBy(name string, amount int, batch *leveldb.Batch) { value := &ValueData{name, int64(amount)} key := qs.createValueKeyFor(name) b, err := qs.db.Get(key, qs.readopts) // Error getting the node from the database. if err != nil && err != leveldb.ErrNotFound { glog.Errorf("Error reading Value %s from the DB\n", name) return } // Node exists in the database -- unmarshal and update. if b != nil && err != leveldb.ErrNotFound { err = json.Unmarshal(b, value) if err != nil { glog.Errorln("Error: couldn't reconstruct value ", err) return } value.Size += int64(amount) } // Are we deleting something? if amount < 0 { if value.Size <= 0 { if batch == nil { qs.db.Delete(key, qs.writeopts) } else { batch.Delete(key) } return } } // Repackage and rewrite. bytes, err := json.Marshal(&value) if err != nil { glog.Errorf("Couldn't write to buffer for value %s\n %s", name, err) return } if batch == nil { qs.db.Put(key, bytes, qs.writeopts) } else { batch.Put(key, bytes) } } func (qs *TripleStore) AddTripleSet(t_s []*quad.Quad) { batch := &leveldb.Batch{} newTs := len(t_s) resizeMap := make(map[string]int) for _, t := range t_s { qs.buildTripleWrite(batch, t) resizeMap[t.Subject]++ resizeMap[t.Predicate]++ resizeMap[t.Object]++ if t.Provenance != "" { resizeMap[t.Provenance]++ } } for k, v := range resizeMap { qs.UpdateValueKeyBy(k, v, batch) } err := qs.db.Write(batch, qs.writeopts) if err != nil { glog.Errorf("Couldn't write to DB for tripleset") return } qs.size += int64(newTs) } func (qs *TripleStore) Close() { buf := new(bytes.Buffer) err := binary.Write(buf, binary.LittleEndian, qs.size) if err == nil { werr := qs.db.Put([]byte("__size"), buf.Bytes(), qs.writeopts) if werr != nil { glog.Errorf("Couldn't write size before closing!") } } else { glog.Errorf("Couldn't convert size before closing!") } qs.db.Close() qs.open = false } func (qs *TripleStore) Quad(k graph.Value) *quad.Quad { var triple quad.Quad b, err := qs.db.Get(k.([]byte), qs.readopts) if err != nil && err != leveldb.ErrNotFound { glog.Errorln("Error: couldn't get triple from DB") return &quad.Quad{} } if err == leveldb.ErrNotFound { // No harm, no foul. return &quad.Quad{} } err = json.Unmarshal(b, &triple) if err != nil { glog.Errorln("Error: couldn't reconstruct triple") return &quad.Quad{} } return &triple } func (qs *TripleStore) convertStringToByteHash(s string) []byte { qs.hasher.Reset() key := make([]byte, 0, qs.hasher.Size()) qs.hasher.Write([]byte(s)) key = qs.hasher.Sum(key) return key } func (qs *TripleStore) ValueOf(s string) graph.Value { return qs.createValueKeyFor(s) } func (qs *TripleStore) valueData(value_key []byte) ValueData { var out ValueData if glog.V(3) { glog.V(3).Infof("%s %v\n", string(value_key[0]), value_key) } b, err := qs.db.Get(value_key, qs.readopts) if err != nil && err != leveldb.ErrNotFound { glog.Errorln("Error: couldn't get value from DB") return out } if b != nil && err != leveldb.ErrNotFound { err = json.Unmarshal(b, &out) if err != nil { glog.Errorln("Error: couldn't reconstruct value") return ValueData{} } } return out } func (qs *TripleStore) NameOf(k graph.Value) string { if k == nil { glog.V(2).Infoln("k was nil") return "" } return qs.valueData(k.([]byte)).Name } func (qs *TripleStore) SizeOf(k graph.Value) int64 { if k == nil { return 0 } return int64(qs.valueData(k.([]byte)).Size) } func (qs *TripleStore) getSize() { var size int64 b, err := qs.db.Get([]byte("__size"), qs.readopts) if err != nil && err != leveldb.ErrNotFound { panic("Couldn't read size " + err.Error()) } if err == leveldb.ErrNotFound { // Must be a new database. Cool qs.size = 0 return } buf := bytes.NewBuffer(b) err = binary.Read(buf, binary.LittleEndian, &size) if err != nil { glog.Errorln("Error: couldn't parse size") } qs.size = size } func (qs *TripleStore) SizeOfPrefix(pre []byte) (int64, error) { limit := make([]byte, len(pre)) copy(limit, pre) end := len(limit) - 1 limit[end]++ ranges := make([]util.Range, 1) ranges[0].Start = pre ranges[0].Limit = limit sizes, err := qs.db.SizeOf(ranges) if err == nil { return (int64(sizes[0]) >> 6) + 1, nil } return 0, nil } func (qs *TripleStore) TripleIterator(d quad.Direction, val graph.Value) graph.Iterator { var prefix string switch d { case quad.Subject: prefix = "sp" case quad.Predicate: prefix = "po" case quad.Object: prefix = "os" case quad.Provenance: prefix = "cp" default: panic("unreachable " + d.String()) } return NewIterator(prefix, d, val, qs) } func (qs *TripleStore) NodesAllIterator() graph.Iterator { return NewAllIterator("z", quad.Any, qs) } func (qs *TripleStore) TriplesAllIterator() graph.Iterator { return NewAllIterator("po", quad.Predicate, qs) } func (qs *TripleStore) TripleDirection(val graph.Value, d quad.Direction) graph.Value { v := val.([]uint8) offset := PositionOf(v[0:2], d, qs) if offset != -1 { return append([]byte("z"), v[offset:offset+qs.hasher.Size()]...) } else { return qs.Quad(val).Get(d) } } func compareBytes(a, b graph.Value) bool { return bytes.Equal(a.([]uint8), b.([]uint8)) } func (qs *TripleStore) FixedIterator() graph.FixedIterator { return iterator.NewFixedIteratorWithCompare(compareBytes) } func init() { graph.RegisterTripleStore("leveldb", newTripleStore, createNewLevelDB) }