Create quads hierarchy

* Move nquads into quad.
* Create cquads simplified parser in quad.
* Move Triple (renamed Quad) to quad.

Also made sure mongo actually implements BulkLoader.
This commit is contained in:
kortschak 2014-07-27 17:42:45 +09:30
parent 01bc63810b
commit 401c58426f
51 changed files with 13400 additions and 5495 deletions

View file

@ -24,19 +24,20 @@ import (
"github.com/google/cayley/graph"
"github.com/google/cayley/graph/iterator"
"github.com/google/cayley/quad"
)
type AllIterator struct {
iterator.Base
prefix []byte
dir graph.Direction
dir quad.Direction
open bool
iter ldbit.Iterator
ts *TripleStore
ro *opt.ReadOptions
}
func NewAllIterator(prefix string, d graph.Direction, ts *TripleStore) *AllIterator {
func NewAllIterator(prefix string, d quad.Direction, ts *TripleStore) *AllIterator {
var it AllIterator
iterator.BaseInit(&it.Base)
it.ro = &opt.ReadOptions{}

View file

@ -24,34 +24,35 @@ import (
"github.com/google/cayley/graph"
"github.com/google/cayley/graph/iterator"
"github.com/google/cayley/quad"
)
type Iterator struct {
iterator.Base
nextPrefix []byte
checkId []byte
dir graph.Direction
dir quad.Direction
open bool
iter ldbit.Iterator
ts *TripleStore
qs *TripleStore
ro *opt.ReadOptions
originalPrefix string
}
func NewIterator(prefix string, d graph.Direction, value graph.Value, ts *TripleStore) *Iterator {
func NewIterator(prefix string, d quad.Direction, value graph.Value, qs *TripleStore) *Iterator {
var it Iterator
iterator.BaseInit(&it.Base)
it.checkId = value.([]byte)
it.dir = d
it.originalPrefix = prefix
it.nextPrefix = make([]byte, 0, 2+ts.hasher.Size())
it.nextPrefix = make([]byte, 0, 2+qs.hasher.Size())
it.nextPrefix = append(it.nextPrefix, []byte(prefix)...)
it.nextPrefix = append(it.nextPrefix, []byte(it.checkId[1:])...)
it.ro = &opt.ReadOptions{}
it.ro.DontFillCache = true
it.iter = ts.db.NewIterator(nil, it.ro)
it.iter = qs.db.NewIterator(nil, it.ro)
it.open = true
it.ts = ts
it.qs = qs
ok := it.iter.Seek(it.nextPrefix)
if !ok {
it.open = false
@ -62,7 +63,7 @@ func NewIterator(prefix string, d graph.Direction, value graph.Value, ts *Triple
func (it *Iterator) Reset() {
if !it.open {
it.iter = it.ts.db.NewIterator(nil, it.ro)
it.iter = it.qs.db.NewIterator(nil, it.ro)
it.open = true
}
ok := it.iter.Seek(it.nextPrefix)
@ -73,7 +74,7 @@ func (it *Iterator) Reset() {
}
func (it *Iterator) Clone() graph.Iterator {
out := NewIterator(it.originalPrefix, it.dir, it.checkId, it.ts)
out := NewIterator(it.originalPrefix, it.dir, it.checkId, it.qs)
out.CopyTagsFrom(it)
return out
}
@ -114,52 +115,52 @@ func (it *Iterator) Next() (graph.Value, bool) {
return nil, false
}
func PositionOf(prefix []byte, d graph.Direction, ts *TripleStore) int {
func PositionOf(prefix []byte, d quad.Direction, qs *TripleStore) int {
if bytes.Equal(prefix, []byte("sp")) {
switch d {
case graph.Subject:
case quad.Subject:
return 2
case graph.Predicate:
return ts.hasher.Size() + 2
case graph.Object:
return 2*ts.hasher.Size() + 2
case graph.Provenance:
case quad.Predicate:
return qs.hasher.Size() + 2
case quad.Object:
return 2*qs.hasher.Size() + 2
case quad.Provenance:
return -1
}
}
if bytes.Equal(prefix, []byte("po")) {
switch d {
case graph.Subject:
return 2*ts.hasher.Size() + 2
case graph.Predicate:
case quad.Subject:
return 2*qs.hasher.Size() + 2
case quad.Predicate:
return 2
case graph.Object:
return ts.hasher.Size() + 2
case graph.Provenance:
case quad.Object:
return qs.hasher.Size() + 2
case quad.Provenance:
return -1
}
}
if bytes.Equal(prefix, []byte("os")) {
switch d {
case graph.Subject:
return ts.hasher.Size() + 2
case graph.Predicate:
return 2*ts.hasher.Size() + 2
case graph.Object:
case quad.Subject:
return qs.hasher.Size() + 2
case quad.Predicate:
return 2*qs.hasher.Size() + 2
case quad.Object:
return 2
case graph.Provenance:
case quad.Provenance:
return -1
}
}
if bytes.Equal(prefix, []byte("cp")) {
switch d {
case graph.Subject:
return 2*ts.hasher.Size() + 2
case graph.Predicate:
return ts.hasher.Size() + 2
case graph.Object:
return 3*ts.hasher.Size() + 2
case graph.Provenance:
case quad.Subject:
return 2*qs.hasher.Size() + 2
case quad.Predicate:
return qs.hasher.Size() + 2
case quad.Object:
return 3*qs.hasher.Size() + 2
case quad.Provenance:
return 2
}
}
@ -171,14 +172,14 @@ func (it *Iterator) Check(v graph.Value) bool {
if val[0] == 'z' {
return false
}
offset := PositionOf(val[0:2], it.dir, it.ts)
offset := PositionOf(val[0:2], it.dir, it.qs)
if offset != -1 {
if bytes.HasPrefix(val[offset:], it.checkId[1:]) {
return true
}
} else {
nameForDir := it.ts.Triple(v).Get(it.dir)
hashForDir := it.ts.ValueOf(nameForDir).([]byte)
nameForDir := it.qs.Quad(v).Get(it.dir)
hashForDir := it.qs.ValueOf(nameForDir).([]byte)
if bytes.Equal(hashForDir, it.checkId) {
return true
}
@ -187,12 +188,12 @@ func (it *Iterator) Check(v graph.Value) bool {
}
func (it *Iterator) Size() (int64, bool) {
return it.ts.SizeOf(it.checkId), true
return it.qs.SizeOf(it.checkId), true
}
func (it *Iterator) DebugString(indent int) string {
size, _ := it.Size()
return fmt.Sprintf("%s(%s %d tags: %v dir: %s size:%d %s)", strings.Repeat(" ", indent), it.Type(), it.UID(), it.Tags(), it.dir, size, it.ts.NameOf(it.checkId))
return fmt.Sprintf("%s(%s %d tags: %v dir: %s size:%d %s)", strings.Repeat(" ", indent), it.Type(), it.UID(), it.Tags(), it.dir, size, it.qs.NameOf(it.checkId))
}
var levelDBType graph.Type

View file

@ -23,10 +23,11 @@ import (
"github.com/google/cayley/graph"
"github.com/google/cayley/graph/iterator"
"github.com/google/cayley/quad"
)
func makeTripleSet() []*graph.Triple {
tripleSet := []*graph.Triple{
func makeTripleSet() []*quad.Quad {
tripleSet := []*quad.Quad{
{"A", "follows", "B", ""},
{"C", "follows", "B", ""},
{"C", "follows", "D", ""},
@ -42,20 +43,20 @@ func makeTripleSet() []*graph.Triple {
return tripleSet
}
func iteratedTriples(ts graph.TripleStore, it graph.Iterator) []*graph.Triple {
func iteratedTriples(qs graph.TripleStore, it graph.Iterator) []*quad.Quad {
var res ordered
for {
val, ok := it.Next()
if !ok {
break
}
res = append(res, ts.Triple(val))
res = append(res, qs.Quad(val))
}
sort.Sort(res)
return res
}
type ordered []*graph.Triple
type ordered []*quad.Quad
func (o ordered) Len() int { return len(o) }
func (o ordered) Less(i, j int) bool {
@ -82,14 +83,14 @@ func (o ordered) Less(i, j int) bool {
}
func (o ordered) Swap(i, j int) { o[i], o[j] = o[j], o[i] }
func iteratedNames(ts graph.TripleStore, it graph.Iterator) []string {
func iteratedNames(qs graph.TripleStore, it graph.Iterator) []string {
var res []string
for {
val, ok := it.Next()
if !ok {
break
}
res = append(res, ts.NameOf(val))
res = append(res, qs.NameOf(val))
}
sort.Strings(res)
return res
@ -107,14 +108,14 @@ func TestCreateDatabase(t *testing.T) {
t.Fatal("Failed to create LevelDB database.")
}
ts, err := newTripleStore(tmpDir, nil)
if ts == nil || err != nil {
qs, err := newTripleStore(tmpDir, nil)
if qs == nil || err != nil {
t.Error("Failed to create leveldb TripleStore.")
}
if s := ts.Size(); s != 0 {
if s := qs.Size(); s != 0 {
t.Errorf("Unexpected size, got:%d expected:0", s)
}
ts.Close()
qs.Close()
err = createNewLevelDB("/dev/null/some terrible path", nil)
if err == nil {
@ -137,53 +138,53 @@ func TestLoadDatabase(t *testing.T) {
t.Fatal("Failed to create LevelDB database.")
}
ts, err := newTripleStore(tmpDir, nil)
if ts == nil || err != nil {
qs, err := newTripleStore(tmpDir, nil)
if qs == nil || err != nil {
t.Error("Failed to create leveldb TripleStore.")
}
ts.AddTriple(&graph.Triple{"Something", "points_to", "Something Else", "context"})
qs.AddTriple(&quad.Quad{"Something", "points_to", "Something Else", "context"})
for _, pq := range []string{"Something", "points_to", "Something Else", "context"} {
if got := ts.NameOf(ts.ValueOf(pq)); got != pq {
if got := qs.NameOf(qs.ValueOf(pq)); got != pq {
t.Errorf("Failed to roundtrip %q, got:%q expect:%q", pq, got, pq)
}
}
if s := ts.Size(); s != 1 {
if s := qs.Size(); s != 1 {
t.Errorf("Unexpected triplestore size, got:%d expect:1", s)
}
ts.Close()
qs.Close()
err = createNewLevelDB(tmpDir, nil)
if err != nil {
t.Fatal("Failed to create LevelDB database.")
}
ts, err = newTripleStore(tmpDir, nil)
if ts == nil || err != nil {
qs, err = newTripleStore(tmpDir, nil)
if qs == nil || err != nil {
t.Error("Failed to create leveldb TripleStore.")
}
ts2, didConvert := ts.(*TripleStore)
ts2, didConvert := qs.(*TripleStore)
if !didConvert {
t.Errorf("Could not convert from generic to LevelDB TripleStore")
}
ts.AddTripleSet(makeTripleSet())
if s := ts.Size(); s != 11 {
qs.AddTripleSet(makeTripleSet())
if s := qs.Size(); s != 11 {
t.Errorf("Unexpected triplestore size, got:%d expect:11", s)
}
if s := ts2.SizeOf(ts.ValueOf("B")); s != 5 {
if s := ts2.SizeOf(qs.ValueOf("B")); s != 5 {
t.Errorf("Unexpected triplestore size, got:%d expect:5", s)
}
ts.RemoveTriple(&graph.Triple{"A", "follows", "B", ""})
if s := ts.Size(); s != 10 {
qs.RemoveTriple(&quad.Quad{"A", "follows", "B", ""})
if s := qs.Size(); s != 10 {
t.Errorf("Unexpected triplestore size after RemoveTriple, got:%d expect:10", s)
}
if s := ts2.SizeOf(ts.ValueOf("B")); s != 4 {
if s := ts2.SizeOf(qs.ValueOf("B")); s != 4 {
t.Errorf("Unexpected triplestore size, got:%d expect:4", s)
}
ts.Close()
qs.Close()
}
func TestIterator(t *testing.T) {
@ -199,14 +200,14 @@ func TestIterator(t *testing.T) {
t.Fatal("Failed to create LevelDB database.")
}
ts, err := newTripleStore(tmpDir, nil)
if ts == nil || err != nil {
qs, err := newTripleStore(tmpDir, nil)
if qs == nil || err != nil {
t.Error("Failed to create leveldb TripleStore.")
}
ts.AddTripleSet(makeTripleSet())
qs.AddTripleSet(makeTripleSet())
var it graph.Iterator
it = ts.NodesAllIterator()
it = qs.NodesAllIterator()
if it == nil {
t.Fatal("Got nil iterator.")
}
@ -241,7 +242,7 @@ func TestIterator(t *testing.T) {
}
sort.Strings(expect)
for i := 0; i < 2; i++ {
got := iteratedNames(ts, it)
got := iteratedNames(qs, it)
sort.Strings(got)
if !reflect.DeepEqual(got, expect) {
t.Errorf("Unexpected iterated result on repeat %d, got:%v expect:%v", i, got, expect)
@ -250,23 +251,23 @@ func TestIterator(t *testing.T) {
}
for _, pq := range expect {
if !it.Check(ts.ValueOf(pq)) {
if !it.Check(qs.ValueOf(pq)) {
t.Errorf("Failed to find and check %q correctly", pq)
}
}
// FIXME(kortschak) Why does this fail?
/*
for _, pq := range []string{"baller"} {
if it.Check(ts.ValueOf(pq)) {
if it.Check(qs.ValueOf(pq)) {
t.Errorf("Failed to check %q correctly", pq)
}
}
*/
it.Reset()
it = ts.TriplesAllIterator()
it = qs.TriplesAllIterator()
edge, _ := it.Next()
triple := ts.Triple(edge)
triple := qs.Quad(edge)
set := makeTripleSet()
var ok bool
for _, t := range set {
@ -279,7 +280,7 @@ func TestIterator(t *testing.T) {
t.Errorf("Failed to find %q during iteration, got:%q", triple, set)
}
ts.Close()
qs.Close()
}
func TestSetIterator(t *testing.T) {
@ -292,95 +293,95 @@ func TestSetIterator(t *testing.T) {
t.Fatalf("Failed to create working directory")
}
ts, err := newTripleStore(tmpDir, nil)
if ts == nil || err != nil {
qs, err := newTripleStore(tmpDir, nil)
if qs == nil || err != nil {
t.Error("Failed to create leveldb TripleStore.")
}
defer ts.Close()
defer qs.Close()
ts.AddTripleSet(makeTripleSet())
qs.AddTripleSet(makeTripleSet())
expect := []*graph.Triple{
expect := []*quad.Quad{
{"C", "follows", "B", ""},
{"C", "follows", "D", ""},
}
sort.Sort(ordered(expect))
// Subject iterator.
it := ts.TripleIterator(graph.Subject, ts.ValueOf("C"))
it := qs.TripleIterator(quad.Subject, qs.ValueOf("C"))
if got := iteratedTriples(ts, it); !reflect.DeepEqual(got, expect) {
if got := iteratedTriples(qs, it); !reflect.DeepEqual(got, expect) {
t.Errorf("Failed to get expected results, got:%v expect:%v", got, expect)
}
it.Reset()
and := iterator.NewAnd()
and.AddSubIterator(ts.TriplesAllIterator())
and.AddSubIterator(qs.TriplesAllIterator())
and.AddSubIterator(it)
if got := iteratedTriples(ts, and); !reflect.DeepEqual(got, expect) {
if got := iteratedTriples(qs, and); !reflect.DeepEqual(got, expect) {
t.Errorf("Failed to get confirm expected results, got:%v expect:%v", got, expect)
}
// Object iterator.
it = ts.TripleIterator(graph.Object, ts.ValueOf("F"))
it = qs.TripleIterator(quad.Object, qs.ValueOf("F"))
expect = []*graph.Triple{
expect = []*quad.Quad{
{"B", "follows", "F", ""},
{"E", "follows", "F", ""},
}
sort.Sort(ordered(expect))
if got := iteratedTriples(ts, it); !reflect.DeepEqual(got, expect) {
if got := iteratedTriples(qs, it); !reflect.DeepEqual(got, expect) {
t.Errorf("Failed to get expected results, got:%v expect:%v", got, expect)
}
and = iterator.NewAnd()
and.AddSubIterator(ts.TripleIterator(graph.Subject, ts.ValueOf("B")))
and.AddSubIterator(qs.TripleIterator(quad.Subject, qs.ValueOf("B")))
and.AddSubIterator(it)
expect = []*graph.Triple{
expect = []*quad.Quad{
{"B", "follows", "F", ""},
}
if got := iteratedTriples(ts, and); !reflect.DeepEqual(got, expect) {
if got := iteratedTriples(qs, and); !reflect.DeepEqual(got, expect) {
t.Errorf("Failed to get confirm expected results, got:%v expect:%v", got, expect)
}
// Predicate iterator.
it = ts.TripleIterator(graph.Predicate, ts.ValueOf("status"))
it = qs.TripleIterator(quad.Predicate, qs.ValueOf("status"))
expect = []*graph.Triple{
expect = []*quad.Quad{
{"B", "status", "cool", "status_graph"},
{"D", "status", "cool", "status_graph"},
{"G", "status", "cool", "status_graph"},
}
sort.Sort(ordered(expect))
if got := iteratedTriples(ts, it); !reflect.DeepEqual(got, expect) {
if got := iteratedTriples(qs, it); !reflect.DeepEqual(got, expect) {
t.Errorf("Failed to get expected results from predicate iterator, got:%v expect:%v", got, expect)
}
// Provenance iterator.
it = ts.TripleIterator(graph.Provenance, ts.ValueOf("status_graph"))
it = qs.TripleIterator(quad.Provenance, qs.ValueOf("status_graph"))
expect = []*graph.Triple{
expect = []*quad.Quad{
{"B", "status", "cool", "status_graph"},
{"D", "status", "cool", "status_graph"},
{"G", "status", "cool", "status_graph"},
}
sort.Sort(ordered(expect))
if got := iteratedTriples(ts, it); !reflect.DeepEqual(got, expect) {
if got := iteratedTriples(qs, it); !reflect.DeepEqual(got, expect) {
t.Errorf("Failed to get expected results from predicate iterator, got:%v expect:%v", got, expect)
}
it.Reset()
// Order is important
and = iterator.NewAnd()
and.AddSubIterator(ts.TripleIterator(graph.Subject, ts.ValueOf("B")))
and.AddSubIterator(qs.TripleIterator(quad.Subject, qs.ValueOf("B")))
and.AddSubIterator(it)
expect = []*graph.Triple{
expect = []*quad.Quad{
{"B", "status", "cool", "status_graph"},
}
if got := iteratedTriples(ts, and); !reflect.DeepEqual(got, expect) {
if got := iteratedTriples(qs, and); !reflect.DeepEqual(got, expect) {
t.Errorf("Failed to get confirm expected results, got:%v expect:%v", got, expect)
}
it.Reset()
@ -388,12 +389,12 @@ func TestSetIterator(t *testing.T) {
// Order is important
and = iterator.NewAnd()
and.AddSubIterator(it)
and.AddSubIterator(ts.TripleIterator(graph.Subject, ts.ValueOf("B")))
and.AddSubIterator(qs.TripleIterator(quad.Subject, qs.ValueOf("B")))
expect = []*graph.Triple{
expect = []*quad.Quad{
{"B", "status", "cool", "status_graph"},
}
if got := iteratedTriples(ts, and); !reflect.DeepEqual(got, expect) {
if got := iteratedTriples(qs, and); !reflect.DeepEqual(got, expect) {
t.Errorf("Failed to get confirm expected results, got:%v expect:%v", got, expect)
}
}
@ -406,17 +407,17 @@ func TestOptimize(t *testing.T) {
if err != nil {
t.Fatalf("Failed to create working directory")
}
ts, err := newTripleStore(tmpDir, nil)
if ts == nil || err != nil {
qs, err := newTripleStore(tmpDir, nil)
if qs == nil || err != nil {
t.Error("Failed to create leveldb TripleStore.")
}
ts.AddTripleSet(makeTripleSet())
qs.AddTripleSet(makeTripleSet())
// With an linksto-fixed pair
fixed := ts.FixedIterator()
fixed.Add(ts.ValueOf("F"))
fixed := qs.FixedIterator()
fixed.Add(qs.ValueOf("F"))
fixed.AddTag("internal")
lto := iterator.NewLinksTo(ts, fixed, graph.Object)
lto := iterator.NewLinksTo(qs, fixed, quad.Object)
oldIt := lto.Clone()
newIt, ok := lto.Optimize()
@ -427,8 +428,8 @@ func TestOptimize(t *testing.T) {
t.Errorf("Optimized iterator type does not match original, got:%v expect:%v", newIt.Type(), Type())
}
newTriples := iteratedTriples(ts, newIt)
oldTriples := iteratedTriples(ts, oldIt)
newTriples := iteratedTriples(qs, newIt)
oldTriples := iteratedTriples(qs, oldIt)
if !reflect.DeepEqual(newTriples, oldTriples) {
t.Errorf("Optimized iteration does not match original")
}

View file

@ -30,6 +30,7 @@ import (
"github.com/google/cayley/graph"
"github.com/google/cayley/graph/iterator"
"github.com/google/cayley/quad"
)
const (
@ -56,110 +57,110 @@ func createNewLevelDB(path string, _ graph.Options) error {
return err
}
defer db.Close()
ts := &TripleStore{}
ts.db = db
ts.writeopts = &opt.WriteOptions{
qs := &TripleStore{}
qs.db = db
qs.writeopts = &opt.WriteOptions{
Sync: true,
}
ts.Close()
qs.Close()
return nil
}
func newTripleStore(path string, options graph.Options) (graph.TripleStore, error) {
var ts TripleStore
ts.path = path
var qs TripleStore
qs.path = path
cache_size := DefaultCacheSize
if val, ok := options.IntKey("cache_size_mb"); ok {
cache_size = val
}
ts.dbOpts = &opt.Options{
qs.dbOpts = &opt.Options{
BlockCache: cache.NewLRUCache(cache_size * opt.MiB),
}
ts.dbOpts.ErrorIfMissing = true
qs.dbOpts.ErrorIfMissing = true
write_buffer_mb := DefaultWriteBufferSize
if val, ok := options.IntKey("write_buffer_mb"); ok {
write_buffer_mb = val
}
ts.dbOpts.WriteBuffer = write_buffer_mb * opt.MiB
ts.hasher = sha1.New()
ts.writeopts = &opt.WriteOptions{
qs.dbOpts.WriteBuffer = write_buffer_mb * opt.MiB
qs.hasher = sha1.New()
qs.writeopts = &opt.WriteOptions{
Sync: false,
}
ts.readopts = &opt.ReadOptions{}
db, err := leveldb.OpenFile(ts.path, ts.dbOpts)
qs.readopts = &opt.ReadOptions{}
db, err := leveldb.OpenFile(qs.path, qs.dbOpts)
if err != nil {
panic("Error, couldn't open! " + err.Error())
}
ts.db = db
glog.Infoln(ts.GetStats())
ts.getSize()
return &ts, nil
qs.db = db
glog.Infoln(qs.GetStats())
qs.getSize()
return &qs, nil
}
func (ts *TripleStore) GetStats() string {
func (qs *TripleStore) GetStats() string {
out := ""
stats, err := ts.db.GetProperty("leveldb.stats")
stats, err := qs.db.GetProperty("leveldb.stats")
if err == nil {
out += fmt.Sprintln("Stats: ", stats)
}
out += fmt.Sprintln("Size: ", ts.size)
out += fmt.Sprintln("Size: ", qs.size)
return out
}
func (ts *TripleStore) Size() int64 {
return ts.size
func (qs *TripleStore) Size() int64 {
return qs.size
}
func (ts *TripleStore) createKeyFor(d [3]graph.Direction, triple *graph.Triple) []byte {
key := make([]byte, 0, 2+(ts.hasher.Size()*3))
func (qs *TripleStore) createKeyFor(d [3]quad.Direction, triple *quad.Quad) []byte {
key := make([]byte, 0, 2+(qs.hasher.Size()*3))
// TODO(kortschak) Remove dependence on String() method.
key = append(key, []byte{d[0].Prefix(), d[1].Prefix()}...)
key = append(key, ts.convertStringToByteHash(triple.Get(d[0]))...)
key = append(key, ts.convertStringToByteHash(triple.Get(d[1]))...)
key = append(key, ts.convertStringToByteHash(triple.Get(d[2]))...)
key = append(key, qs.convertStringToByteHash(triple.Get(d[0]))...)
key = append(key, qs.convertStringToByteHash(triple.Get(d[1]))...)
key = append(key, qs.convertStringToByteHash(triple.Get(d[2]))...)
return key
}
func (ts *TripleStore) createProvKeyFor(d [3]graph.Direction, triple *graph.Triple) []byte {
key := make([]byte, 0, 2+(ts.hasher.Size()*4))
func (qs *TripleStore) createProvKeyFor(d [3]quad.Direction, triple *quad.Quad) []byte {
key := make([]byte, 0, 2+(qs.hasher.Size()*4))
// TODO(kortschak) Remove dependence on String() method.
key = append(key, []byte{graph.Provenance.Prefix(), d[0].Prefix()}...)
key = append(key, ts.convertStringToByteHash(triple.Get(graph.Provenance))...)
key = append(key, ts.convertStringToByteHash(triple.Get(d[0]))...)
key = append(key, ts.convertStringToByteHash(triple.Get(d[1]))...)
key = append(key, ts.convertStringToByteHash(triple.Get(d[2]))...)
key = append(key, []byte{quad.Provenance.Prefix(), d[0].Prefix()}...)
key = append(key, qs.convertStringToByteHash(triple.Get(quad.Provenance))...)
key = append(key, qs.convertStringToByteHash(triple.Get(d[0]))...)
key = append(key, qs.convertStringToByteHash(triple.Get(d[1]))...)
key = append(key, qs.convertStringToByteHash(triple.Get(d[2]))...)
return key
}
func (ts *TripleStore) createValueKeyFor(s string) []byte {
key := make([]byte, 0, 1+ts.hasher.Size())
func (qs *TripleStore) createValueKeyFor(s string) []byte {
key := make([]byte, 0, 1+qs.hasher.Size())
key = append(key, []byte("z")...)
key = append(key, ts.convertStringToByteHash(s)...)
key = append(key, qs.convertStringToByteHash(s)...)
return key
}
func (ts *TripleStore) AddTriple(t *graph.Triple) {
func (qs *TripleStore) AddTriple(t *quad.Quad) {
batch := &leveldb.Batch{}
ts.buildWrite(batch, t)
err := ts.db.Write(batch, ts.writeopts)
qs.buildWrite(batch, t)
err := qs.db.Write(batch, qs.writeopts)
if err != nil {
glog.Errorf("Couldn't write to DB for triple %s", t)
return
}
ts.size++
qs.size++
}
// Short hand for direction permutations.
var (
spo = [3]graph.Direction{graph.Subject, graph.Predicate, graph.Object}
osp = [3]graph.Direction{graph.Object, graph.Subject, graph.Predicate}
pos = [3]graph.Direction{graph.Predicate, graph.Object, graph.Subject}
pso = [3]graph.Direction{graph.Predicate, graph.Subject, graph.Object}
spo = [3]quad.Direction{quad.Subject, quad.Predicate, quad.Object}
osp = [3]quad.Direction{quad.Object, quad.Subject, quad.Predicate}
pos = [3]quad.Direction{quad.Predicate, quad.Object, quad.Subject}
pso = [3]quad.Direction{quad.Predicate, quad.Subject, quad.Object}
)
func (ts *TripleStore) RemoveTriple(t *graph.Triple) {
_, err := ts.db.Get(ts.createKeyFor(spo, t), ts.readopts)
func (qs *TripleStore) RemoveTriple(t *quad.Quad) {
_, err := qs.db.Get(qs.createKeyFor(spo, t), qs.readopts)
if err != nil && err != leveldb.ErrNotFound {
glog.Errorf("Couldn't access DB to confirm deletion")
return
@ -169,45 +170,45 @@ func (ts *TripleStore) RemoveTriple(t *graph.Triple) {
return
}
batch := &leveldb.Batch{}
batch.Delete(ts.createKeyFor(spo, t))
batch.Delete(ts.createKeyFor(osp, t))
batch.Delete(ts.createKeyFor(pos, t))
ts.UpdateValueKeyBy(t.Get(graph.Subject), -1, batch)
ts.UpdateValueKeyBy(t.Get(graph.Predicate), -1, batch)
ts.UpdateValueKeyBy(t.Get(graph.Object), -1, batch)
if t.Get(graph.Provenance) != "" {
batch.Delete(ts.createProvKeyFor(pso, t))
ts.UpdateValueKeyBy(t.Get(graph.Provenance), -1, batch)
batch.Delete(qs.createKeyFor(spo, t))
batch.Delete(qs.createKeyFor(osp, t))
batch.Delete(qs.createKeyFor(pos, t))
qs.UpdateValueKeyBy(t.Get(quad.Subject), -1, batch)
qs.UpdateValueKeyBy(t.Get(quad.Predicate), -1, batch)
qs.UpdateValueKeyBy(t.Get(quad.Object), -1, batch)
if t.Get(quad.Provenance) != "" {
batch.Delete(qs.createProvKeyFor(pso, t))
qs.UpdateValueKeyBy(t.Get(quad.Provenance), -1, batch)
}
err = ts.db.Write(batch, nil)
err = qs.db.Write(batch, nil)
if err != nil {
glog.Errorf("Couldn't delete triple %s", t)
return
}
ts.size--
qs.size--
}
func (ts *TripleStore) buildTripleWrite(batch *leveldb.Batch, t *graph.Triple) {
func (qs *TripleStore) buildTripleWrite(batch *leveldb.Batch, t *quad.Quad) {
bytes, err := json.Marshal(*t)
if err != nil {
glog.Errorf("Couldn't write to buffer for triple %s\n %s\n", t, err)
return
}
batch.Put(ts.createKeyFor(spo, t), bytes)
batch.Put(ts.createKeyFor(osp, t), bytes)
batch.Put(ts.createKeyFor(pos, t), bytes)
if t.Get(graph.Provenance) != "" {
batch.Put(ts.createProvKeyFor(pso, t), bytes)
batch.Put(qs.createKeyFor(spo, t), bytes)
batch.Put(qs.createKeyFor(osp, t), bytes)
batch.Put(qs.createKeyFor(pos, t), bytes)
if t.Get(quad.Provenance) != "" {
batch.Put(qs.createProvKeyFor(pso, t), bytes)
}
}
func (ts *TripleStore) buildWrite(batch *leveldb.Batch, t *graph.Triple) {
ts.buildTripleWrite(batch, t)
ts.UpdateValueKeyBy(t.Get(graph.Subject), 1, nil)
ts.UpdateValueKeyBy(t.Get(graph.Predicate), 1, nil)
ts.UpdateValueKeyBy(t.Get(graph.Object), 1, nil)
if t.Get(graph.Provenance) != "" {
ts.UpdateValueKeyBy(t.Get(graph.Provenance), 1, nil)
func (qs *TripleStore) buildWrite(batch *leveldb.Batch, t *quad.Quad) {
qs.buildTripleWrite(batch, t)
qs.UpdateValueKeyBy(t.Get(quad.Subject), 1, nil)
qs.UpdateValueKeyBy(t.Get(quad.Predicate), 1, nil)
qs.UpdateValueKeyBy(t.Get(quad.Object), 1, nil)
if t.Get(quad.Provenance) != "" {
qs.UpdateValueKeyBy(t.Get(quad.Provenance), 1, nil)
}
}
@ -216,10 +217,10 @@ type ValueData struct {
Size int64
}
func (ts *TripleStore) UpdateValueKeyBy(name string, amount int, batch *leveldb.Batch) {
func (qs *TripleStore) UpdateValueKeyBy(name string, amount int, batch *leveldb.Batch) {
value := &ValueData{name, int64(amount)}
key := ts.createValueKeyFor(name)
b, err := ts.db.Get(key, ts.readopts)
key := qs.createValueKeyFor(name)
b, err := qs.db.Get(key, qs.readopts)
// Error getting the node from the database.
if err != nil && err != leveldb.ErrNotFound {
@ -241,7 +242,7 @@ func (ts *TripleStore) UpdateValueKeyBy(name string, amount int, batch *leveldb.
if amount < 0 {
if value.Size <= 0 {
if batch == nil {
ts.db.Delete(key, ts.writeopts)
qs.db.Delete(key, qs.writeopts)
} else {
batch.Delete(key)
}
@ -256,18 +257,18 @@ func (ts *TripleStore) UpdateValueKeyBy(name string, amount int, batch *leveldb.
return
}
if batch == nil {
ts.db.Put(key, bytes, ts.writeopts)
qs.db.Put(key, bytes, qs.writeopts)
} else {
batch.Put(key, bytes)
}
}
func (ts *TripleStore) AddTripleSet(t_s []*graph.Triple) {
func (qs *TripleStore) AddTripleSet(t_s []*quad.Quad) {
batch := &leveldb.Batch{}
newTs := len(t_s)
resizeMap := make(map[string]int)
for _, t := range t_s {
ts.buildTripleWrite(batch, t)
qs.buildTripleWrite(batch, t)
resizeMap[t.Subject]++
resizeMap[t.Predicate]++
resizeMap[t.Object]++
@ -276,68 +277,68 @@ func (ts *TripleStore) AddTripleSet(t_s []*graph.Triple) {
}
}
for k, v := range resizeMap {
ts.UpdateValueKeyBy(k, v, batch)
qs.UpdateValueKeyBy(k, v, batch)
}
err := ts.db.Write(batch, ts.writeopts)
err := qs.db.Write(batch, qs.writeopts)
if err != nil {
glog.Errorf("Couldn't write to DB for tripleset")
return
}
ts.size += int64(newTs)
qs.size += int64(newTs)
}
func (ts *TripleStore) Close() {
func (qs *TripleStore) Close() {
buf := new(bytes.Buffer)
err := binary.Write(buf, binary.LittleEndian, ts.size)
err := binary.Write(buf, binary.LittleEndian, qs.size)
if err == nil {
werr := ts.db.Put([]byte("__size"), buf.Bytes(), ts.writeopts)
werr := qs.db.Put([]byte("__size"), buf.Bytes(), qs.writeopts)
if werr != nil {
glog.Errorf("Couldn't write size before closing!")
}
} else {
glog.Errorf("Couldn't convert size before closing!")
}
ts.db.Close()
ts.open = false
qs.db.Close()
qs.open = false
}
func (ts *TripleStore) Triple(k graph.Value) *graph.Triple {
var triple graph.Triple
b, err := ts.db.Get(k.([]byte), ts.readopts)
func (qs *TripleStore) Quad(k graph.Value) *quad.Quad {
var triple quad.Quad
b, err := qs.db.Get(k.([]byte), qs.readopts)
if err != nil && err != leveldb.ErrNotFound {
glog.Errorln("Error: couldn't get triple from DB")
return &graph.Triple{}
return &quad.Quad{}
}
if err == leveldb.ErrNotFound {
// No harm, no foul.
return &graph.Triple{}
return &quad.Quad{}
}
err = json.Unmarshal(b, &triple)
if err != nil {
glog.Errorln("Error: couldn't reconstruct triple")
return &graph.Triple{}
return &quad.Quad{}
}
return &triple
}
func (ts *TripleStore) convertStringToByteHash(s string) []byte {
ts.hasher.Reset()
key := make([]byte, 0, ts.hasher.Size())
ts.hasher.Write([]byte(s))
key = ts.hasher.Sum(key)
func (qs *TripleStore) convertStringToByteHash(s string) []byte {
qs.hasher.Reset()
key := make([]byte, 0, qs.hasher.Size())
qs.hasher.Write([]byte(s))
key = qs.hasher.Sum(key)
return key
}
func (ts *TripleStore) ValueOf(s string) graph.Value {
return ts.createValueKeyFor(s)
func (qs *TripleStore) ValueOf(s string) graph.Value {
return qs.createValueKeyFor(s)
}
func (ts *TripleStore) valueData(value_key []byte) ValueData {
func (qs *TripleStore) valueData(value_key []byte) ValueData {
var out ValueData
if glog.V(3) {
glog.V(3).Infof("%s %v\n", string(value_key[0]), value_key)
}
b, err := ts.db.Get(value_key, ts.readopts)
b, err := qs.db.Get(value_key, qs.readopts)
if err != nil && err != leveldb.ErrNotFound {
glog.Errorln("Error: couldn't get value from DB")
return out
@ -352,30 +353,30 @@ func (ts *TripleStore) valueData(value_key []byte) ValueData {
return out
}
func (ts *TripleStore) NameOf(k graph.Value) string {
func (qs *TripleStore) NameOf(k graph.Value) string {
if k == nil {
glog.V(2).Infoln("k was nil")
return ""
}
return ts.valueData(k.([]byte)).Name
return qs.valueData(k.([]byte)).Name
}
func (ts *TripleStore) SizeOf(k graph.Value) int64 {
func (qs *TripleStore) SizeOf(k graph.Value) int64 {
if k == nil {
return 0
}
return int64(ts.valueData(k.([]byte)).Size)
return int64(qs.valueData(k.([]byte)).Size)
}
func (ts *TripleStore) getSize() {
func (qs *TripleStore) getSize() {
var size int64
b, err := ts.db.Get([]byte("__size"), ts.readopts)
b, err := qs.db.Get([]byte("__size"), qs.readopts)
if err != nil && err != leveldb.ErrNotFound {
panic("Couldn't read size " + err.Error())
}
if err == leveldb.ErrNotFound {
// Must be a new database. Cool
ts.size = 0
qs.size = 0
return
}
buf := bytes.NewBuffer(b)
@ -383,10 +384,10 @@ func (ts *TripleStore) getSize() {
if err != nil {
glog.Errorln("Error: couldn't parse size")
}
ts.size = size
qs.size = size
}
func (ts *TripleStore) SizeOfPrefix(pre []byte) (int64, error) {
func (qs *TripleStore) SizeOfPrefix(pre []byte) (int64, error) {
limit := make([]byte, len(pre))
copy(limit, pre)
end := len(limit) - 1
@ -394,45 +395,45 @@ func (ts *TripleStore) SizeOfPrefix(pre []byte) (int64, error) {
ranges := make([]util.Range, 1)
ranges[0].Start = pre
ranges[0].Limit = limit
sizes, err := ts.db.SizeOf(ranges)
sizes, err := qs.db.SizeOf(ranges)
if err == nil {
return (int64(sizes[0]) >> 6) + 1, nil
}
return 0, nil
}
func (ts *TripleStore) TripleIterator(d graph.Direction, val graph.Value) graph.Iterator {
func (qs *TripleStore) TripleIterator(d quad.Direction, val graph.Value) graph.Iterator {
var prefix string
switch d {
case graph.Subject:
case quad.Subject:
prefix = "sp"
case graph.Predicate:
case quad.Predicate:
prefix = "po"
case graph.Object:
case quad.Object:
prefix = "os"
case graph.Provenance:
case quad.Provenance:
prefix = "cp"
default:
panic("unreachable " + d.String())
}
return NewIterator(prefix, d, val, ts)
return NewIterator(prefix, d, val, qs)
}
func (ts *TripleStore) NodesAllIterator() graph.Iterator {
return NewAllIterator("z", graph.Any, ts)
func (qs *TripleStore) NodesAllIterator() graph.Iterator {
return NewAllIterator("z", quad.Any, qs)
}
func (ts *TripleStore) TriplesAllIterator() graph.Iterator {
return NewAllIterator("po", graph.Predicate, ts)
func (qs *TripleStore) TriplesAllIterator() graph.Iterator {
return NewAllIterator("po", quad.Predicate, qs)
}
func (ts *TripleStore) TripleDirection(val graph.Value, d graph.Direction) graph.Value {
func (qs *TripleStore) TripleDirection(val graph.Value, d quad.Direction) graph.Value {
v := val.([]uint8)
offset := PositionOf(v[0:2], d, ts)
offset := PositionOf(v[0:2], d, qs)
if offset != -1 {
return append([]byte("z"), v[offset:offset+ts.hasher.Size()]...)
return append([]byte("z"), v[offset:offset+qs.hasher.Size()]...)
} else {
return ts.Triple(val).Get(d)
return qs.Quad(val).Get(d)
}
}
@ -440,7 +441,7 @@ func compareBytes(a, b graph.Value) bool {
return bytes.Equal(a.([]uint8), b.([]uint8))
}
func (ts *TripleStore) FixedIterator() graph.FixedIterator {
func (qs *TripleStore) FixedIterator() graph.FixedIterator {
return iterator.NewFixedIteratorWithCompare(compareBytes)
}